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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
153
total RNA-seq
151
ATAC-seq
99
single cell RNA-seq
27
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
254
Transcription
250
DNA binding
186
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
57
August, 2017
49
June, 2019
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
12
February, 2023
8
January, 2021
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
August, 2018
3
February, 2021
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
570
bam
567
bigWig
269
bed narrowPeak
259
tsv
230
fastq
100
tagAlign
83
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
721
Homo sapiens
Biosample type
2619
tissue
721
primary cell
531
cell line
383
in vitro differentiated cells
10
stem cell
Organ
248
epithelium
193
pancreas
38
connective tissue
35
vasculature
34
kidney
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
516
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
588
hg19
497
GRCh38
Lab
481
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
month_released!
June, 2018
organ_slims!
blood vessel
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
721 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
9
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