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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
total RNA-seq
109
single cell RNA-seq
19
pCHi-C
14
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
593
Transcription
1
DNA accessibility
Date released
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
38
May, 2021
37
July, 2019
27
March, 2020
22
February, 2020
19
November, 2019
8
February, 2021
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
618
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
618
Homo sapiens
Biosample type
618
tissue
249
primary cell
126
in vitro differentiated cells
119
cell line
3
stem cell
Organ
connective tissue
399
adipose tissue
275
pancreas
154
liver
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
12
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
618
AMP
Genome assembly (visualization)
464
hg19
463
GRCh38
Lab
617
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
award.project!
HPAP
organ_slims!
connective tissue
spinal cord
BIOSAMPLE
ASSAY
618 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
islet of Langerhans
261
6
1
liver
147
1
1
heart left ventricle
3
18
1
heart right ventricle
1
17
1
right cardiac atrium
18
1
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