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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
48
ChIP-seq
13
total RNA-seq
2
snATAC-seq
1
single cell RNA-seq
Assay category
81
DNA accessibility
48
DNA binding
14
Transcription
Target of assay
31
transcription factor
12
control
5
histone
5
histone modification
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
99
bed narrowPeak
48
bam
48
fastq
36
bigBed narrowPeak
36
bigWig
5
bed bed3
4
tsv
4
txt
Organism
143
Homo sapiens
Biosample type
143
tissue
59
in vitro differentiated cells
12
primary cell
6
cell line
3
stem cell
Organ
48
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
18
pancreas
14
epithelium
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
125
AMP
18
T1D
Genome assembly (visualization)
71
GRCh38
69
hg19
Lab
125
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
award.project!
HPAP
BIOSAMPLE
ASSAY
143 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
tissue
liver
38
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
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