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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
21
pCHi-C
7
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
48
Transcription
7
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
66
tsv
49
bigWig
47
bam
7
bedpe bed3+
7
hic
2
bed narrowPeak
Organism
80
Homo sapiens
Biosample type
207
primary cell
140
in vitro differentiated cells
80
tissue
32
cell line
4
stem cell
Organ
46
pancreas
9
heart
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
brain
2
intestine
2
thymus
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
75
AMP
5
T1D
Genome assembly (visualization)
56
hg19
47
GRCh38
Lab
78
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
pCHi-C
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
38
2
2
psoas muscle
2
1
2
pancreas
2
1
1
aorta
1
1
1
heart left ventricle
1
1
1
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