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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
12
WGBS
8
Hi-C
7
ATAC-seq
5
MeRIP-seq
2
FAIRE-seq
1
DNase-seq
Assay category
27
DNA methylation
10
DNA accessibility
8
3D chromatin structure
Target of assay
5
control
nucleotide modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
196
August, 2021
152
May, 2020
120
May, 2019
117
February, 2021
113
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
66
May, 2022
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
11
September, 2017
8
January, 2018
7
November, 2020
5
March, 2019
5
March, 2023
4
July, 2018
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
90
bigWig
88
bam
tsv
23
bed bedMethyl
23
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
50
Homo sapiens
Biosample type
32
tissue
15
primary cell
3
cell line
Organ
14
heart
11
epithelium
7
brain
7
pancreas
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
4
connective tissue
3
liver
1
artery
1
eye
1
pericardium
Project
50
AMP
Genome assembly (visualization)
28
hg19
16
GRCh38
Lab
45
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
award.project!
HPAP
files.file_type!
tsv
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
50 results
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Clear Filters
RRBS
WGBS
Hi-C
ATAC-seq
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
heart left ventricle
1
4
2
gastrocnemius medialis
4
islet of Langerhans
1
2
aorta
2
heart right ventricle
2
+ See 13 more…
primary cell
osteoblast
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
+ See 9 more…
cell line
EndoC_BH1
3
See all biosamples
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