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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
18
bam
18
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
19
Homo sapiens
Biosample type
19
tissue
Organ
678
liver
637
pancreas
588
connective tissue
447
adipose tissue
271
heart
266
epithelium
249
kidney
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
10
GRCh38
8
hg19
Lab
19
AMP-T2D consortium
award.project!
HPAP
files.file_type!
xls
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
14
2
1
1
1
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