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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
19
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
control
Date released
19
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
Available data
647
bam
613
bigWig
411
tsv
372
fastq
214
bed narrowPeak
91
bigBed narrowPeak
27
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
27
Homo sapiens
Biosample type
25
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
pancreas
26
connective tissue
21
epithelium
18
ureter
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
2
vein
1
spleen
Project
27
AMP
Genome assembly (visualization)
27
GRCh38
25
hg19
Lab
27
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
award.project!
HPAP
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
19
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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