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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
52
DNA binding
10
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
319
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
72
October, 2019
64
April, 2019
62
August, 2017
50
December, 2017
45
October, 2018
30
December, 2018
21
January, 2019
14
September, 2018
7
October, 2017
5
September, 2017
2
July, 2019
1
March, 2019
1
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
42
tissue
19
primary cell
1
in vitro differentiated cells
Organ
23
pancreas
13
musculature of body
6
liver
4
connective tissue
3
adipose tissue
3
epithelium
Project
62
AMP
Genome assembly (visualization)
62
hg19
38
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
skeletal muscle tissue
13
pancreas
12
islet of Langerhans
6
1
1
liver
5
adipose tissue
1
+ See 3 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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