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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
79
ChIP-seq
4
Hi-C
Assay category
197
DNA accessibility
79
DNA binding
4
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
64
November, 2017
14
August, 2017
10
October, 2019
8
November, 2018
3
July, 2019
Available data
2799
bam
2589
bigWig
1742
bed narrowPeak
1116
tsv
1088
fastq
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
20
hic
19
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
0
zippedFastqFolder
Organism
280
Homo sapiens
Biosample type
174
tissue
60
cell line
46
primary cell
Organ
78
kidney
64
liver
41
brain
36
limb
33
musculature of body
30
heart
24
epithelium
19
vasculature
18
ureter
15
blood vessel
connective tissue
8
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
280
AMP
HPAP
Genome assembly (visualization)
259
GRCh38
258
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
award.project!
HPAP
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
280 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
choroid plexus epithelial cell
1
2
+ See 15 more…
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