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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
1
DNA accessibility
Date released
89
February, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3392
bam
3154
bigWig
1749
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
txt
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
100
Homo sapiens
Biosample type
100
tissue
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
101
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
award.project!
HPAP
lab.title!
Katalin Susztak, Upenn
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
101 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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