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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
26
ATAC-seq
26
single cell RNA-seq
21
total RNA-seq
5
WGBS
Assay category
133
DNA binding
47
Transcription
26
DNA accessibility
5
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
17
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
October, 2017
4
December, 2017
1
June, 2018
Available data
211
fastq
209
bam
159
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
41
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
Organism
211
Homo sapiens
Biosample type
88
cell line
82
tissue
26
primary cell
15
in vitro differentiated cells
Organ
60
pancreas
49
liver
45
blood
45
bodily fluid
26
adipose tissue
26
connective tissue
18
epithelium
8
spleen
4
embryo
Project
211
AMP
HPAP
Genome assembly (visualization)
174
hg19
159
GRCh38
Lab
187
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
award.project!
HPAP
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
18
6
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
mesenchymal cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 3 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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