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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
13
total RNA-seq
10
MeRIP-seq
10
snATAC-seq
2
Hi-C
Assay category
44
DNA accessibility
13
Transcription
2
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
24
May, 2022
18
February, 2023
10
November, 2020
8
January, 2021
5
March, 2019
2
August, 2021
1
May, 2021
1
October, 2017
Available data
26
fastq
25
bam
18
bed narrowPeak
6
txt
2
bed broadPeak
1
bedpe
1
bedpe bed3+
1
bigWig
1
hic
1
tsv
Organism
69
Homo sapiens
Biosample type
63
tissue
6
cell line
Organ
191
kidney
71
liver
69
pancreas
40
heart
19
lung
8
blood
8
bodily fluid
6
epithelium
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
HPAP
43
AMP
26
T1D
Genome assembly (visualization)
22
hg19
3
GRCh38
Lab
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
award.project!
HPAP
lab.title!
AMP-T2D consortium
month_released!
April, 2018
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
total RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
tissue
islet of Langerhans
34
12
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
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