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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
115
total RNA-seq
34
ATAC-seq
17
pCHi-C
10
MeRIP-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
149
DNA binding
115
Transcription
44
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
13
control
12
transcription factor
RNA binding protein
5
nucleotide modification
Date released
230
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
10
November, 2020
8
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
340
Homo sapiens
Biosample type
231
primary cell
56
tissue
42
in vitro differentiated cells
11
cell line
Organ
61
pancreas
8
blood
bodily fluid
6
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
228
T1D
112
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3758
AMP-T2D consortium
330
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
award.project!
HPAP
organ_slims!
bodily fluid
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
MeRIP-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
11
29
4
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
32
5
5
cell line
EndoC_BH1
6
3
2
See all biosamples
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