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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
21
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
36
histone
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
18
October, 2019
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
1
February, 2020
1
January, 2018
Available data
42
bam
25
bigWig
19
tsv
15
fastq
6
bed narrowPeak
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
44
Homo sapiens
Biosample type
19
tissue
17
in vitro differentiated cells
8
cell line
Organ
688
liver
604
connective tissue
486
pancreas
459
adipose tissue
324
kidney
296
heart
246
epithelium
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
44
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
award.project!
HPAP
month_released!
July, 2018
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
11
5
2
1
in vitro differentiated cells
pancreatic endoderm
8
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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