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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
33
ATAC-seq
27
total RNA-seq
4
single cell RNA-seq
Assay category
47
DNA binding
33
DNA accessibility
31
Transcription
Target of assay
44
histone
44
histone modification
27
broad histone mark
17
narrow histone mark
3
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
129
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
90
fastq
87
bam
86
bigWig
58
bed narrowPeak
26
tsv
20
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
1
csv
Organism
111
Homo sapiens
Biosample type
73
primary cell
38
tissue
Organ
77
pancreas
61
epithelium
16
brain
14
kidney
2
adipose tissue
2
connective tissue
1
spleen
Project
111
AMP
Genome assembly (visualization)
98
GRCh38
86
hg19
Lab
96
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
36
missing controlled_by
award.project!
HPAP
month_released!
April, 2018
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
4
10
pancreatic acinar cell
8
3
2
pancreatic alpha cell
3
10
pancreatic endocrine cell
11
+ See 1 more…
tissue
brain
15
kidney
11
3
body of pancreas
4
adipose tissue
1
cerebellum (Hemisphere)
1
+ See 3 more…
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