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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
9
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
276
DNA accessibility
260
DNA binding
55
DNA methylation
9
3D chromatin structure
Target of assay
224
histone
224
histone modification
116
broad histone mark
108
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
November, 2018
Available data
582
bigWig
574
bam
409
fastq
270
bed narrowPeak
264
tsv
153
zippedFastqFolder
96
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
24
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1047
Homo sapiens
Biosample type
2377
tissue
1047
primary cell
601
cell line
352
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
346
pancreas
39
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
324
HPAP
204
T1D
ITG
Genome assembly (visualization)
600
hg19
504
GRCh38
Lab
484
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
ITG
month_released!
August, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
1047 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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