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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 49total RNA-seq
  • 27ChIP-seq
  • 17single cell RNA-seq
  • 13DNase-seq
  • 6snATAC-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1RRBS
Assay category
  • 95DNA accessibility
  • 66Transcription
  • 27DNA binding
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 20histone
  • 20histone modification
  • 10broad histone mark
  • 10narrow histone mark
  • 6control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 128August, 2021
  • 23April, 2019
  • 14May, 2023
  • 13June, 2019
  • 5February, 2021
  • 4October, 2019
  • 2July, 2019
  • 1December, 2019
Available data
  • 98bed narrowPeak
  • 64xls
  • 62txt
  • 41bam
  • 34bigWig
  • 32bigBed narrowPeak
  • 13bed bed3+
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 5csv
  • 5tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 190Homo sapiens
Biosample type
  • 190tissue
Organ
  • 190kidney
Project
  • 190AMP
  • KPMP
Genome assembly (visualization)
  • 108GRCh38
  • 36hg19
Lab
  • 142Katalin Susztak, Upenn
  • 48AMP-T2D consortium
Audit category:
  • 5audit script error
award.project!
  • KPMP
BIOSAMPLE
ASSAY

190 results

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ATAC-seq
total RNA-seq
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single cell RNA-seq
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FAIRE-seq
Hi-C
RRBS
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