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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
441
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
441
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
27
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
598
bigWig
569
bam
435
bed narrowPeak
388
fastq
356
bigBed narrowPeak
169
tsv
61
bed broadPeak
61
bigBed broadPeak
55
tagAlign
6
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
670
Homo sapiens
Biosample type
341
cell line
315
tissue
14
in vitro differentiated cells
primary cell
Organ
670
liver
613
connective tissue
559
pancreas
465
adipose tissue
362
heart
262
kidney
240
brain
181
blood vessel
181
vasculature
158
bone element
130
artery
109
epithelium
limb
78
musculature of body
56
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
670
AMP
Genome assembly (visualization)
598
hg19
519
GRCh38
Lab
603
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
award.project!
KPMP
biosample_type!
primary cell
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
670 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
2
2
1
tissue
liver
102
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
in vitro differentiated cells
hepatocyte
14
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