Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
783
ChIP-seq
748
total RNA-seq
198
ATAC-seq
127
single cell RNA-seq
87
RNA microarray
23
WGBS
22
pCHi-C
16
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
889
Transcription
783
DNA binding
217
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
157
control
71
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
235
October, 2019
227
August, 2021
193
May, 2020
130
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
41
May, 2022
40
May, 2024
29
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
12
November, 2018
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
799
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2043
Homo sapiens
Biosample type
2045
tissue
705
primary cell
569
cell line
366
in vitro differentiated cells
7
stem cell
Organ
541
connective tissue
482
adipose tissue
pancreas
355
liver
286
heart
238
brain
184
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2025
AMP
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1296
GRCh38
1178
hg19
Lab
1803
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent control read length
award.project!
KPMP
files.file_type!
bed bed3+
organ_slims!
intestine
pancreas
BIOSAMPLE
ASSAY
2045 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
2
382
3
3
1
liver
142
167
20
1
3
1
1
1
1
kidney
27
49
75
17
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
4
1
1
1
+ See 154 more…
See all biosamples
Download