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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ATAC-seq
69
total RNA-seq
40
ChIP-seq
20
single cell RNA-seq
16
snATAC-seq
1
Hi-C
1
pCHi-C
Assay category
111
DNA accessibility
89
Transcription
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
128
August, 2021
40
May, 2022
40
May, 2024
19
April, 2020
14
May, 2023
1
May, 2021
Available data
124
bed narrowPeak
64
xls
60
bigWig
57
txt
1
hic
Organism
241
Homo sapiens
Biosample type
412
primary cell
242
tissue
54
in vitro differentiated cells
41
cell line
2
stem cell
Organ
142
kidney
pancreas
40
heart
40
liver
19
lung
1
thymus
Project
222
AMP
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
115
GRCh38
21
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
award.project!
KPMP
lab.title!
AMP-T2D consortium
organ_slims!
intestine
pancreas
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
pCHi-C
tissue
kidney
75
49
11
6
1
left cardiac atrium
40
liver
20
20
lung
9
10
thymus
1
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