Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
741
ChIP-seq
239
ATAC-seq
174
DNase-seq
132
single cell RNA-seq
86
RNA microarray
27
snATAC-seq
23
WGBS
23
pCHi-C
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1006
Transcription
741
DNA binding
444
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
548
histone
548
histone modification
274
broad histone mark
274
narrow histone mark
140
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
232
October, 2019
228
August, 2021
223
August, 2017
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
40
May, 2021
40
May, 2024
40
November, 2019
36
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
November, 2018
18
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1612
bam
1501
bigWig
921
tsv
865
bed narrowPeak
506
bigBed narrowPeak
287
fastq
204
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
161
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2355
Homo sapiens
Biosample type
2355
tissue
1074
primary cell
379
in vitro differentiated cells
257
cell line
8
stem cell
Organ
546
connective tissue
498
pancreas
487
adipose tissue
liver
313
heart
265
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2306
AMP
KPMP
31
T1D
18
LungMap
Genome assembly (visualization)
1615
GRCh38
1481
hg19
Lab
2091
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
award.project!
KPMP
organ_slims!
liver
ovary
BIOSAMPLE
ASSAY
2355 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
68
1
6
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
kidney
49
27
75
13
17
6
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
4
1
1
1
+ See 173 more…
See all biosamples
Download