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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
48
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
33
May, 2019
15
October, 2019
9
July, 2019
5
June, 2019
4
August, 2021
4
March, 2020
4
November, 2017
1
February, 2020
Available data
63
bam
51
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
tsv
9
bed bed3+
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
75
Homo sapiens
Biosample type
48
tissue
27
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
292
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
53
hg19
44
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
award.project!
KPMP
files.file_type!
ibed
organ_slims!
artery
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
9
1
1
4
2
1
ascending aorta
12
1
2
thoracic aorta
12
2
1
primary cell
endothelial cell of umbilical vein
11
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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