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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
62
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
62
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
28
control
broad histone mark
20
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
37
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
December, 2018
3
January, 2019
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
455
bam
434
bigWig
402
tsv
57
fastq
20
bed narrowPeak
16
bigBed narrowPeak
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
4
tagAlign
3
bigBed broadPeak
1
bedpe bed3+
Organism
484
Homo sapiens
Biosample type
482
tissue
2
primary cell
1
in vitro differentiated cells
Organ
868
pancreas
748
liver
640
connective tissue
480
epithelium
471
adipose tissue
336
heart
292
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
61
eye
42
blood
42
bodily fluid
33
embryo
27
nerve
20
lung
18
ureter
16
skeleton
14
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
485
AMP
Genome assembly (visualization)
433
GRCh38
433
hg19
Lab
485
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
award.project!
KPMP
month_released!
December, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
subcutaneous abdominal adipose tissue
16
3
spleen
9
2
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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