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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
9
DNA binding
3
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
6
histone
6
histone modification
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
9
November, 2018
December, 2018
3
January, 2019
2
July, 2019
1
March, 2020
1
October, 2017
Available data
14
bam
13
fastq
10
bigWig
7
bed narrowPeak
6
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
16
Homo sapiens
Biosample type
15
tissue
1
primary cell
Organ
868
pancreas
748
liver
640
connective tissue
480
epithelium
471
adipose tissue
336
heart
292
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
61
eye
42
blood
42
bodily fluid
33
embryo
27
nerve
20
lung
18
ureter
16
skeleton
14
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
10
GRCh38
9
hg19
Lab
16
AMP-T2D consortium
award.project!
KPMP
month_released!
December, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RRBS
pCHi-C
total RNA-seq
tissue
spleen
9
2
1
1
1
pericardium
1
primary cell
pericardium fibroblast
1
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