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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
18
ChIP-seq
10
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
70
DNA accessibility
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
192
May, 2022
188
May, 2021
107
August, 2021
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
78
bed narrowPeak
64
xls
txt
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
vcf
Organism
107
Homo sapiens
Biosample type
73
tissue
34
cell line
in vitro differentiated cells
Organ
73
kidney
31
liver
2
pancreas
Project
107
AMP
Genome assembly (visualization)
64
GRCh38
16
hg19
Lab
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
award.project!
LungMap
biosample_type!
in vitro differentiated cells
files.file_type!
txt
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
1
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
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