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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
total RNA-seq
84
RNA microarray
48
ChIP-seq
21
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
550
Transcription
48
DNA binding
21
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
10
transcription factor
5
RNA binding protein
3
control
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
589
bigWig
569
bam
552
tsv
89
txt
62
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
707
Homo sapiens
Biosample type
585
tissue
96
cell line
primary cell
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
106
heart
66
artery
66
blood vessel
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
707
AMP
Genome assembly (visualization)
606
GRCh38
571
hg19
Lab
667
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
LungMap
biosample_type!
primary cell
month_released!
March, 2019
BIOSAMPLE
ASSAY
707 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
left cardiac atrium
40
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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