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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
114
total RNA-seq
36
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
184
DNA binding
116
Transcription
36
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
39
February, 2018
29
December, 2017
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
269
bam
237
bigWig
141
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
351
Homo sapiens
Biosample type
1652
tissue
928
primary cell
351
in vitro differentiated cells
211
cell line
10
stem cell
Organ
86
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
351
AMP
Genome assembly (visualization)
254
hg19
228
GRCh38
4
hg18
Lab
297
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
award.project!
LungMap
files.file_type!
bigBed narrowPeak
month_released!
February, 2021
June, 2018
BIOSAMPLE
ASSAY
351 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
1
2
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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