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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
47
total RNA-seq
24
ChIP-seq
2
DNase-seq
1
FAIRE-seq
Assay category
50
DNA accessibility
47
Transcription
24
DNA binding
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
121
bam
113
bigWig
47
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
121
Homo sapiens
Biosample type
379
tissue
121
primary cell
29
cell line
4
in vitro differentiated cells
Organ
30
epithelium
20
blood vessel
20
vasculature
20
vein
9
kidney
1
liver
Project
76
AMP
45
T1D
Genome assembly (visualization)
115
hg19
67
GRCh38
Lab
76
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
award.project!
LungMap
BIOSAMPLE
ASSAY
121 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
epithelial cell of proximal tubule
7
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
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