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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
243
total RNA-seq
200
ATAC-seq
181
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
17
pCHi-C
8
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
426
Transcription
280
DNA accessibility
265
DNA binding
56
DNA methylation
7
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
34
October, 2019
19
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
580
bigWig
577
bam
397
fastq
278
bed narrowPeak
260
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
26
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
1051
Homo sapiens
Biosample type
2180
tissue
1051
primary cell
596
cell line
393
in vitro differentiated cells
10
stem cell
Organ
405
epithelium
345
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
522
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
509
GRCh38
Lab
487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
LungMap
month_released!
June, 2018
organ_slims!
brain
heart
BIOSAMPLE
ASSAY
1051 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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