Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
total RNA-seq
100
ATAC-seq
25
ChIP-seq
2
Hi-C
1
pCHi-C
Assay category
210
Transcription
100
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
25
control
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
342
bam
291
bigWig
209
tsv
bed narrowPeak
50
tagAlign
2
bedpe bed3+
2
hic
Organism
338
Homo sapiens
Biosample type
186
tissue
147
primary cell
5
cell line
Organ
167
liver
24
pancreas
4
epithelium
Project
293
AMP
45
T1D
Genome assembly (visualization)
255
hg19
208
GRCh38
Lab
293
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
award.project!
LungMap
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
338 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
23
islet of Langerhans
19
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
EndoC_BH1
1
2
1
HepG2
1
See all biosamples
Download