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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
184
total RNA-seq
23
DNase-seq
22
ATAC-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
533
DNA binding
188
Transcription
45
DNA accessibility
6
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
30
August, 2021
19
June, 2019
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
Available data
673
bam
616
bigWig
450
fastq
440
bed narrowPeak
361
bigBed narrowPeak
169
tsv
82
tagAlign
80
bed broadPeak
80
bigBed broadPeak
26
bed bed3+
3
tar
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
779
Homo sapiens
Biosample type
400
cell line
378
tissue
1
primary cell
Organ
939
pancreas
789
liver
683
connective tissue
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
779
AMP
Genome assembly (visualization)
615
hg19
525
GRCh38
Lab
709
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
award.project!
LungMap
files.file_type!
bedpe bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
779 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
Hi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
1
tissue
liver
145
167
2
20
3
1
1
1
1
right lobe of liver
10
3
2
1
1
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
hepatic stellate cell
1
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