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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
96
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
83
histone
83
histone modification
75
narrow histone mark
16
control
8
broad histone mark
Date released
86
October, 2019
November, 2017
17
July, 2019
12
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
131
Homo sapiens
Biosample type
124
tissue
7
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
441
epithelium
354
liver
299
heart
250
kidney
159
bone element
151
vasculature
150
blood vessel
131
brain
116
artery
55
eye
49
musculature of body
38
limb
24
embryo
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
95
hg19
91
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
award.project!
LungMap
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
November, 2017
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
cerebellum (Hemisphere)
2
1
1
1
superior frontal gyrus
4
temporal lobe
2
1
1
angular gyrus
3
+ See 70 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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