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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
34
DNase-seq
8
ATAC-seq
8
snATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
103
DNA binding
50
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
32
histone
32
histone modification
20
broad histone mark
18
control
12
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
43
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
January, 2018
Available data
148
bam
125
bed narrowPeak
125
bigWig
118
bigBed narrowPeak
60
fastq
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
164
Homo sapiens
Biosample type
95
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
8
T1D
Genome assembly (visualization)
130
hg19
129
GRCh38
Lab
156
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
award.project!
LungMap
files.file_type!
ibed
organ_slims!
vasculature
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 8 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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