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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ATAC-seq
53
total RNA-seq
50
single cell RNA-seq
47
WGBS
6
MeRIP-seq
6
snATAC-seq
4
Hi-C
2
STARR-seq
Assay category
130
DNA accessibility
103
Transcription
47
DNA methylation
4
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
73
August, 2021
47
September, 2023
37
February, 2023
19
September, 2020
14
May, 2023
7
August, 2020
6
February, 2021
6
November, 2020
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
64
bed narrowPeak
64
xls
txt
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
292
Homo sapiens
Biosample type
152
primary cell
132
tissue
8
cell line
Organ
215
pancreas
158
epithelium
134
kidney
71
liver
40
heart
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
93
AMP
47
KPMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
85
Katalin Susztak, Upenn
47
KPMP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
3
audit script error
award.project!
LungMap
files.file_type!
txt
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
292 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
STARR-seq
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
kidney
75
50
6
1
cell line
EndoC_BH1
6
HEK293T
2
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