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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
435
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
435
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
243
transcription factor
119
histone
119
histone modification
70
control
67
broad histone mark
66
recombinant protein
52
narrow histone mark
36
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
0
April, 2020
Available data
461
bam
403
bigWig
394
fastq
357
bed narrowPeak
324
bigBed narrowPeak
78
tagAlign
68
bed broadPeak
62
bigBed broadPeak
26
tsv
3
tar
1
csv
Organism
476
Homo sapiens
Biosample type
315
cell line
82
tissue
79
primary cell
Organ
315
liver
91
brain
72
pancreas
67
epithelium
6
vasculature
blood vessel
Project
476
AMP
LungMap
Genome assembly (visualization)
350
GRCh38
350
hg19
Lab
476
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
award.project!
LungMap
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
476 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 3 more…
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