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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
181
DNase-seq
100
ATAC-seq
69
ChIP-seq
1
pCHi-C
Assay category
281
DNA accessibility
190
Transcription
69
DNA binding
Target of assay
38
histone
38
histone modification
34
narrow histone mark
28
control
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
483
bam
455
bigWig
222
bed narrowPeak
195
bigBed narrowPeak
189
tsv
181
bed bed3+
181
bed broadPeak
181
bigBed broadPeak
50
tagAlign
Organism
541
Homo sapiens
Biosample type
355
tissue
185
primary cell
1
cell line
Organ
196
liver
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
496
AMP
45
T1D
Genome assembly (visualization)
433
hg19
402
GRCh38
Lab
496
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
award.project!
LungMap
month_released!
March, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
541 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
skeletal muscle satellite cell
8
B cell
2
2
+ See 42 more…
cell line
HepG2
1
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