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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
68
total RNA-seq
18
ChIP-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
18
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
18
control
Date released
92
August, 2021
54
February, 2021
16
July, 2019
10
April, 2019
7
March, 2020
6
May, 2019
3
February, 2020
3
May, 2021
3
October, 2019
1
February, 2023
Available data
214
bigWig
199
bam
bed narrowPeak
164
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
195
Homo sapiens
Biosample type
140
tissue
54
cell line
primary cell
1
in vitro differentiated cells
Organ
587
connective tissue
476
adipose tissue
424
pancreas
342
liver
195
heart
157
kidney
150
bone element
87
blood vessel
87
vasculature
73
brain
71
epithelium
65
artery
31
musculature of body
30
limb
26
eye
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
195
AMP
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
195
AMP-T2D consortium
award.project!
T1D
biosample_type!
primary cell
files.file_type!
bed narrowPeak
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
6
4
1
1
1
heart right ventricle
17
1
2
2
1
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
heart
1
4
2
1
1
1
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cell line
smooth muscle cell of the coronary artery
52
2
in vitro differentiated cells
cardiac fibroblast
1
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