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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
26
DNA binding
19
DNA accessibility
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
11
control
10
broad histone mark
7
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
16
May, 2021
15
November, 2019
15
October, 2019
6
November, 2020
2
August, 2021
1
February, 2023
1
March, 2020
Available data
59
bam
52
bigWig
tsv
19
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
55
Homo sapiens
Biosample type
238
primary cell
200
tissue
56
cell line
3
in vitro differentiated cells
Organ
386
liver
61
blood
61
bodily fluid
56
pancreas
42
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
56
AMP
T1D
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
40
inconsistent ontology term
Audit category:
1
inconsistent assembly
award.project!
T1D
files.file_type!
tsv
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
13
18
6
2
1
1
Panc1
13
1
1
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