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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
total RNA-seq
19
ATAC-seq
13
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
32
Transcription
20
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
16
November, 2019
6
November, 2020
2
August, 2021
2
March, 2020
2
October, 2019
1
February, 2023
Available data
47
bam
46
bigWig
33
tsv
13
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
74
Homo sapiens
Biosample type
326
primary cell
75
cell line
58
tissue
24
in vitro differentiated cells
Organ
401
liver
88
pancreas
75
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
0
nerve
Project
75
AMP
T1D
Genome assembly (visualization)
48
hg19
45
GRCh38
Lab
69
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
72
inconsistent ontology term
award.project!
T1D
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
31
19
13
6
2
1
1
glomerular visceral epithelial cell
1
1
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