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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
19
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
31
Transcription
20
DNA accessibility
9
DNA binding
2
3D chromatin structure
Target of assay
17
histone
histone modification
11
control
10
broad histone mark
7
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
8
October, 2019
6
November, 2019
6
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
Available data
42
bam
36
bigWig
32
tsv
3
bed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
hic
Organism
70
Homo sapiens
Biosample type
404
tissue
288
primary cell
71
cell line
2
in vitro differentiated cells
Organ
383
liver
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
65
epithelium
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
71
AMP
T1D
Genome assembly (visualization)
38
hg19
35
GRCh38
Lab
65
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
Audit category:
1
inconsistent assembly
award.project!
T1D
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
31
19
3
6
2
1
1
Panc1
6
1
1
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