Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1065
total RNA-seq
838
ChIP-seq
289
ATAC-seq
182
single cell RNA-seq
176
DNase-seq
87
RNA microarray
29
pCHi-C
20
Hi-C
18
WGBS
18
snATAC-seq
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
GRO-seq
3
snDrop-seq
2
Capture-C
Assay category
1263
Transcription
838
DNA binding
486
DNA accessibility
24
DNA methylation
20
3D chromatin structure
Target of assay
565
histone
565
histone modification
303
narrow histone mark
262
broad histone mark
180
control
95
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
169
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
93
February, 2023
82
November, 2017
80
April, 2019
78
December, 2017
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
45
November, 2019
44
March, 2020
40
May, 2024
26
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1944
bam
1782
bigWig
1112
tsv
991
bed narrowPeak
555
bigBed narrowPeak
262
fastq
205
tagAlign
194
bed bed3+
187
bed broadPeak
176
bigBed broadPeak
160
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2757
Homo sapiens
Biosample type
2462
tissue
825
primary cell
645
cell line
297
in vitro differentiated cells
10
stem cell
Organ
519
connective tissue
432
adipose tissue
331
pancreas
322
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
39
epithelium
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2693
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1894
GRCh38
1800
hg19
3
hg18
Lab
2380
AMP-T2D consortium
142
Katalin Susztak, Upenn
72
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
200
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
4
missing controlled_by
Audit category:
9
inconsistent control read length
award.project!
T1D
month_released!
August, 2017
organ_slims!
embryo
BIOSAMPLE
ASSAY
2759 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
Hi-C
WGBS
snATAC-seq
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
tissue
adipose tissue
382
3
1
islet of Langerhans
196
27
57
6
4
3
1
1
4
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
64
13
1
6
1
1
bone element
84
+ See 174 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
+ See 27 more…
See all biosamples
Download