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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
104
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
104
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
116
May, 2021
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
222
bam
196
bigWig
131
tsv
76
fastq
74
bed narrowPeak
22
tagAlign
18
bed bed3+
14
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
299
Homo sapiens
Biosample type
2391
tissue
817
primary cell
299
in vitro differentiated cells
292
cell line
10
stem cell
Organ
29
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
299
AMP
Genome assembly (visualization)
233
hg19
201
GRCh38
4
hg18
Lab
257
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
award.project!
T1D
month_released!
August, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
299 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
28
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
1
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