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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
108
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
110
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
45
broad histone mark
44
transcription factor
42
narrow histone mark
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
42
August, 2021
26
February, 2018
February, 2021
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
226
bam
202
bigWig
104
bed narrowPeak
103
tsv
99
fastq
40
tagAlign
22
bed bed3+
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
324
Homo sapiens
Biosample type
1841
tissue
822
primary cell
324
in vitro differentiated cells
150
cell line
10
stem cell
Organ
89
connective tissue
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
324
AMP
Genome assembly (visualization)
236
hg19
208
GRCh38
3
hg18
Lab
270
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
award.project!
T1D
month_released!
February, 2021
organ_slims!
embryo
liver
BIOSAMPLE
ASSAY
324 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
definitive endodermal cell
8
2
1
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