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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
164
ChIP-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
256
DNA accessibility
164
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
134
histone
134
histone modification
70
broad histone mark
64
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
409
fastq
386
bigWig
374
bam
174
tsv
164
bed narrowPeak
153
zippedFastqFolder
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
829
Homo sapiens
Biosample type
2583
tissue
829
primary cell
653
cell line
394
in vitro differentiated cells
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
504
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
408
hg19
309
GRCh38
Lab
469
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
biosample_type!
stem cell
month_released!
June, 2019
BIOSAMPLE
ASSAY
829 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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