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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
75
single cell RNA-seq
41
WGBS
37
ChIP-seq
21
snATAC-seq
10
Hi-C
9
RRBS
2
DNase-seq
1
DNAme array
Assay category
172
Transcription
139
DNA accessibility
51
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
February, 2021
41
May, 2021
12
July, 2019
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
420
bigWig
bam
364
fastq
201
bed narrowPeak
165
tsv
153
zippedFastqFolder
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
35
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
409
Homo sapiens
Biosample type
710
tissue
409
primary cell
99
in vitro differentiated cells
74
cell line
7
stem cell
Organ
158
epithelium
146
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
musculature of body
Project
279
HPAP
129
AMP
T1D
1
ITG
Genome assembly (visualization)
53
hg19
11
GRCh38
Lab
279
Klaus Kaestner, Upenn
94
AMP-T2D consortium
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
8
inconsistent ontology term
4
audit script error
award.project!
T1D
files.file_type!
bam
month_released!
February, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
409 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
29
42
25
1
Langerhans cell
73
21
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
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