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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ATAC-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
32
ChIP-seq
19
total RNA-seq
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
1
pCHi-C
Assay category
160
DNA accessibility
106
Transcription
58
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
19
May, 2021
13
August, 2017
11
October, 2019
9
July, 2019
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
429
bam
333
fastq
211
bed narrowPeak
162
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
363
Homo sapiens
Biosample type
899
tissue
363
primary cell
134
cell line
122
in vitro differentiated cells
7
stem cell
Organ
138
epithelium
117
pancreas
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
brain
Project
238
HPAP
124
AMP
T1D
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
238
Klaus Kaestner, Upenn
124
AMP-T2D consortium
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
award.project!
T1D
files.file_type!
bigWig
month_released!
February, 2023
BIOSAMPLE
ASSAY
363 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
RRBS
Hi-C
DNase-seq
DNAme array
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
31
6
15
1
pancreatic beta cell
13
16
6
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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