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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
180
ChIP-seq
138
total RNA-seq
48
snATAC-seq
47
WGBS
19
DNase-seq
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
327
Transcription
268
DNA accessibility
180
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
143
histone
143
histone modification
73
broad histone mark
70
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
409
fastq
398
bigWig
391
bam
189
bed narrowPeak
161
tsv
153
zippedFastqFolder
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
841
Homo sapiens
Biosample type
2374
tissue
841
primary cell
568
cell line
392
in vitro differentiated cells
10
stem cell
Organ
401
epithelium
346
pancreas
38
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
9
liver
5
eye
2
adipose tissue
artery
1
pericardium
Project
516
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
416
hg19
321
GRCh38
Lab
481
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
month_released!
December, 2019
organ_slims!
artery
kidney
BIOSAMPLE
ASSAY
841 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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