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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
138
total RNA-seq
136
single cell RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
280
DNA accessibility
274
Transcription
195
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
July, 2018
43
April, 2018
34
October, 2019
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
363
bam
363
bigWig
361
fastq
211
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
108
tsv
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
16
tagAlign
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
805
Homo sapiens
Biosample type
2549
tissue
805
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
360
epithelium
309
pancreas
32
vasculature
29
kidney
28
connective tissue
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
heart
4
eye
Project
480
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
369
hg19
290
GRCh38
Lab
445
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
month_released!
July, 2018
July, 2019
BIOSAMPLE
ASSAY
805 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
DNAme array
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
35
13
52
5
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
21
3
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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