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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
183
ChIP-seq
183
single cell RNA-seq
141
total RNA-seq
48
snATAC-seq
47
WGBS
25
DNase-seq
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
325
Transcription
272
DNA accessibility
183
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
145
histone
145
histone modification
74
broad histone mark
71
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
406
fastq
401
bigWig
393
bam
194
bed narrowPeak
159
tsv
153
zippedFastqFolder
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
846
Homo sapiens
Biosample type
2155
tissue
846
primary cell
653
cell line
297
in vitro differentiated cells
9
stem cell
Organ
406
epithelium
346
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
521
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
414
hg19
324
GRCh38
Lab
486
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
organ_slims!
connective tissue
nerve
skin of body
BIOSAMPLE
ASSAY
846 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
35
13
12
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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