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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
172
ChIP-seq
149
total RNA-seq
48
snATAC-seq
47
WGBS
25
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
338
Transcription
273
DNA accessibility
172
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
136
histone
136
histone modification
69
broad histone mark
67
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
26
July, 2019
13
October, 2019
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
404
bigWig
403
fastq
397
bam
190
bed narrowPeak
172
tsv
153
zippedFastqFolder
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
847
Homo sapiens
Biosample type
2611
tissue
847
primary cell
584
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
522
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
417
hg19
334
GRCh38
Lab
487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
organ_slims!
vasculature
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
847 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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